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  5. Zm00001e002780_P001

Zm00001e002780_P001 (PAT1, Zm00001e002780)


Aliases : PAT1, Zm00001e002780

Description : transcription factor (GRAS)


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002780_P001
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
AT1G21450 SCL1 SCARECROW-like 1 0.03 OrthoFinder output from all 47 species
AT2G04890 SCL21 SCARECROW-like 21 0.03 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.03 OrthoFinder output from all 47 species
Als_g51666 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06178 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16282 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06602 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02859 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os03g09280.2 PAT1, LOC_Os03g09280 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os10g22430.1 PAT1, LOC_Os10g22430 transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25525 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15692 PAT1 GRAS-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g24150 SCL13 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc07g065270.1.1 PAT1, Solyc07g065270 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Spa_g15312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29195 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55616 SCL5 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14260 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 173 541
No external refs found!