Zm00001e002296_P001 (ATHAM3, HAM3, LOM3,...)


Aliases : ATHAM3, HAM3, LOM3, Zm00001e002296

Description : transcription factor (GRAS)


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002296_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00228020 ATHAM3, HAM3,... RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
AT2G45160 ATHAM1, HAM1, LOM1 GRAS family transcription factor 0.02 OrthoFinder output from all 47 species
Adi_g106923 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17369 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11870.t1 ATHAM3, HAM3,... GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G011800.1 HAM2, LOM2,... GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g12093 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19349 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01644 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g40390.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Len_g24209 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02436 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03889 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03890 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37422 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g13262 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005674 No alias GRAS-type transcription factor & original description: CDS=1-2607 0.04 OrthoFinder output from all 47 species
Smo56382 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Solyc01g090950.4.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc08g078800.1.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Zm00001e007302_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e023181_P003 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e036709_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 282 644
No external refs found!