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  5. Zm00001e001226_P001

Zm00001e001226_P001 (PUB13, ATPUB13, Zm00001e001226)


Aliases : PUB13, ATPUB13, Zm00001e001226

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e001226_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00200790 evm_27.TU.AmTr_v1... U-box domain-containing protein 11 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g059681 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15659 PUB12, AtPUB12 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aspi01Gene44181.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0003.g008052 PUB14, ATPUB14 not classified & original description: CDS=293-1597 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036326 No alias not classified & original description: CDS=1-918 0.02 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.32G061700.1 Ceric.32G061700 not classified & original description: pacid=50598646... 0.05 OrthoFinder output from all 47 species
Dde_g39767 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g04978 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.06 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Msp_g10832 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07136 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g16801 PUB13, ATPUB13 E3 ubiquiTin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 359 429
IPR000225 Armadillo 485 523
IPR000225 Armadillo 567 605
No external refs found!