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  5. Zm00001e000702_P004

Zm00001e000702_P004 (PRP39, Zm00001e000702)


Aliases : PRP39, Zm00001e000702

Description : pre-mRNA-processing protein (PRP39)


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000702_P004

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00226980 PRP39,... No description available 0.05 OrthoFinder output from all 47 species
Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019406 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059074 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087387 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g37742 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73033 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.04 OrthoFinder output from all 47 species
Cre16.g670300 PRP39 No description available 0.01 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021383001 AT PRP39-2, PRP39-2 No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01028421001 PRP39 No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01028422001 PRP39 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01028423001 PRP39 No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g11200.1 PRP39, LOC_Os03g11200 pre-mRNA-processing protein (PRP39) 0.05 OrthoFinder output from all 47 species
Len_g23571 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6626g0010 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Mp6g00560.1 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Pir_g60863 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29159 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001814 PRP39 pre-mRNA-processing protein *(PRP39) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005318 PRP39 pre-mRNA-processing protein *(PRP39) & original... 0.02 OrthoFinder output from all 47 species
Sam_g18657 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Smo109541 PRP39 Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Tin_g19871 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!