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  5. Zm00001e000423_P001

Zm00001e000423_P001 (SVR1, Zm00001e000423)


Aliases : SVR1, Zm00001e000423

Description : rRNA pseudouridine synthase (RsuA)


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000423_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.1 OrthoFinder output from all 47 species
Adi_g021649 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Ala_g07739 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0293.g063450 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Azfi_s1775.g106727 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Cba_g12885 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Ceric.20G017700.1 SVR1, Ceric.20G017700 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.09 OrthoFinder output from all 47 species
Dac_g04133 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Dcu_g06821 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.08 OrthoFinder output from all 47 species
Dde_g15379 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Gb_12891 SVR1 rRNA pseudouridine synthase (RsuA) 0.06 OrthoFinder output from all 47 species
LOC_Os03g05806.1 SVR1, LOC_Os03g05806 rRNA pseudouridine synthase (RsuA) 0.11 OrthoFinder output from all 47 species
Len_g30464 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Pir_g20012 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Pnu_g06316 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Ppi_g18476 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.05 OrthoFinder output from all 47 species
Sam_g12462 No alias plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Sam_g49457 No alias plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Smo45172 SVR1 RNA processing.RNA... 0.04 OrthoFinder output from all 47 species
Solyc11g008360.3.1 SVR1, Solyc11g008360 rRNA pseudouridine synthase (RsuA) 0.05 OrthoFinder output from all 47 species
Spa_g22396 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 220 362
IPR002942 S4_RNA-bd 157 198
No external refs found!