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  5. Gb_41835

Gb_41835


Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana (sp|q0wp85|pp150_arath : 510.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41835

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00209480 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00256660 OTP43,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.08 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.06 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
AT3G15200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.05 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.06 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.06 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.16 OrthoFinder output from all 47 species
Gb_20750 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.06 OrthoFinder output from all 47 species
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.07 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.08 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.08 OrthoFinder output from all 47 species
Gb_27355 No alias Pentatricopeptide repeat-containing protein At5g11310,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.06 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.06 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
Solyc03g117570.3.1 Solyc03g117570 Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.06 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.12 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.05 OrthoFinder output from all 47 species
Solyc10g049570.3.1 Solyc10g049570 Pentatricopeptide repeat-containing protein At2g13420,... 0.04 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.06 OrthoFinder output from all 47 species
Zm00001e021940_P001 Zm00001e021940 Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 263 311
IPR002885 Pentatricopeptide_repeat 450 498
IPR002885 Pentatricopeptide_repeat 323 356
IPR002885 Pentatricopeptide_repeat 163 188
No external refs found!