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  5. Gb_41806

Gb_41806


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 278.0)


Gene families : OG0000039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41806

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00032410 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g007388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g041028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g048291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056397 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g056398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g068366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g072543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g072996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g073678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g124558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g128881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g22844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47921 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g20221 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00653.t1 Aspi01Gene00653 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00816.t1 Aspi01Gene00816 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03850.t1 Aspi01Gene03850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05923.t1 Aspi01Gene05923 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06029.t1 Aspi01Gene06029 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06296.t1 Aspi01Gene06296 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07097.t1 Aspi01Gene07097 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09137.t1 Aspi01Gene09137 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09508.t1 Aspi01Gene09508 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene10803.t1 ORF120, Aspi01Gene10803 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14688.t1 Aspi01Gene14688 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17352.t1 Aspi01Gene17352 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20161.t1 Aspi01Gene20161 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38650.t1 Aspi01Gene38650 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40557.t1 Aspi01Gene40557 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene40662.t1 Aspi01Gene40662 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40851.t1 Aspi01Gene40851 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42554.t1 Aspi01Gene42554 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42705.t1 Aspi01Gene42705 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48983.t1 Aspi01Gene48983 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56406.t1 Aspi01Gene56406 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56815.t1 Aspi01Gene56815 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57651.t1 Aspi01Gene57651 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58286.t1 Aspi01Gene58286 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58807.t1 Aspi01Gene58807 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62893.t1 Aspi01Gene62893 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65251.t1 Aspi01Gene65251 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene67932.t1 Aspi01Gene67932 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71123.t1 Aspi01Gene71123 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17200 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g18137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_01598 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_08225 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_11684 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_18389 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_20270 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_27398 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_29886 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g28515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g41209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47975 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11340 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11983 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g16639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24025 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g38209 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g03888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03154 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g14118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14546 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g27031 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g44968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12650 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g18702 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g19050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23852 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g24329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g27640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g28622 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 391 446
No external refs found!