Aliases : ATCOL4, COL4
Description : transcription factor (BBX-CO)
Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_41704 | |
Cluster | HCCA: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00006p00262710 | COL2, ATCOL2,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g03545 | COL3, ATCOL3 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01036037001 | ATCOL4, COL4 | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g08150.1 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g42020.1 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os08g15050.1 | ATCOL5, COL5,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g06464.1 | COL2, ATCOL2,... | Zinc finger protein CO3 OS=Oryza sativa subsp. japonica... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os10g41100.1 | ATCOL5, COL5,... | Transcription factor GHD7 OS=Oryza sativa subsp.... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g10567 | COL1, ATCOL1 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e002319_P001 | ATCOL4, COL4,... | Transcription factor GHD7 OS=Oryza sativa subsp.... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e007691_P001 | Zm00001e007691 | transcription factor (BBX-CO) | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e013804_P001 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e037706_P002 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e037873_P001 | ATCOL4, COL4,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e041152_P001 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005506 | iron ion binding | IEP | HCCA |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
No external refs found! |