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  5. Gb_41247

Gb_41247


Description : component IDM1 of ROS1-recruitment complex. PHD finger transcription factor


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41247

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
AT3G14980 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g08216 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.04 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19628.t1 Aspi01Gene19628 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40689.t1 Aspi01Gene40689 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40690.t1 Aspi01Gene40690 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53154.t1 Aspi01Gene53154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G070400.1 Ceric.19G070400 not classified & original description: pacid=50576012... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.22 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.181 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.182 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01024715001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Len_g59746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g13686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.03 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g07629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e042012_P001 Zm00001e042012 component IDM1 of ROS1-recruitment complex. PHD finger... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 985 1026
IPR032308 TDBD 873 944
No external refs found!