Gb_40990

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana (sp|f4ilr7|dexh1_arath : 1298.0)

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_40990

Target	Alias	Description	ECC score	Gene Family Method
AT1G48650	No alias	DEA(D/H)-box RNA helicase family protein	0.04	OrthoFinder output from all 47 species
AT1G58060	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Adi_g021909	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g29313	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0022.g015910	No alias	not classified & original description: CDS=1-1104	0.04	OrthoFinder output from all 47 species
Azfi_s0037.g025865	No alias	not classified & original description: CDS=97-4182	0.05	OrthoFinder output from all 47 species
Ceric.23G070100.1	Ceric.23G070100	not classified & original description: pacid=50609964...	0.05	OrthoFinder output from all 47 species
Dcu_g44577	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g18970	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011809001	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.04	OrthoFinder output from all 47 species
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os04g35260.1	LOC_Os04g35260	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	OrthoFinder output from all 47 species
Len_g41812	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14172	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g48089	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10298	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18315	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g20526	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g06502	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14536	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016669	No alias	not classified & original description: CDS=25-1776	0.03	OrthoFinder output from all 47 species
Sam_g07185	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g08954	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo177444	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	OrthoFinder output from all 47 species
Solyc03g118920.3.1	Solyc03g118920	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g007510.4.1	Solyc04g007510	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	740	816
IPR001650	Helicase_C	550	676
IPR011545	DEAD/DEAH_box_helicase_dom	294	449
IPR011709	DEAD-box_helicase_OB_fold	899	979

External Links

No external refs found!

Gb_40990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation