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  5. Gb_40956

Gb_40956 (CLA, DXS, CLA1, DEF, DXPS2)


Aliases : CLA, DXS, CLA1, DEF, DXPS2

Description : 1-deoxy-D-xylulose 5-phosphate synthase (DXS)


Gene families : OG0001325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40956

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00123940 CLA, DXS, CLA1,... Secondary metabolism.terpenoids.methylerythritol... 0.04 OrthoFinder output from all 47 species
AT3G21500 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 0.02 OrthoFinder output from all 47 species
Adi_g107983 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Aspi01Gene17606.t1 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Cba_g38055 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.02 OrthoFinder output from all 47 species
Ceric.03G088900.1 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
GSVIVT01029112001 CLA, DXS, CLA1,... Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder output from all 47 species
MA_10426889g0010 CLA, DXS, CLA1,... 1-deoxy-D-xylulose 5-phosphate synthase (DXS) 0.03 OrthoFinder output from all 47 species
Msp_g22124 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Ore_g27687 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.02 OrthoFinder output from all 47 species
Ore_g37260 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.02 OrthoFinder output from all 47 species
Pnu_g17578 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.05 OrthoFinder output from all 47 species
Pnu_g23612 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014635 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Sam_g24724 No alias EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Tin_g14973 CLA, DXS, CLA1,... EC_2.2 transferase transferring aldehyde or ketonic... 0.03 OrthoFinder output from all 47 species
Zm00001e033028_P001 CLA, DXS, CLA1,... 1-deoxy-D-xylulose 5-phosphate synthase (DXS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEA Interproscan
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR033248 Transketolase_C 605 728
IPR005475 Transketolase-like_Pyr-bd 428 587
IPR005477 Dxylulose-5-P_synthase 104 389
No external refs found!