Gb_40955 (RPL16)

Aliases : RPL16

Description : 50S ribosomal protein L16, chloroplastic OS=Physcomitrella patens subsp. patens (sp|q6yxk9|rk16_phypa : 127.0)

Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_40955

Target	Alias	Description	ECC score	Gene Family Method
ATCG00790	RPL16	ribosomal protein L16	0.03	OrthoFinder output from all 47 species
ATMG00080	RPL16	ribosomal protein L16	0.02	OrthoFinder output from all 47 species
Ceric.05G042300.1	RPL16, Ceric.05G042300	component *(uL16c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.05G052200.1	RPL16, Ceric.05G052200	not classified & original description: pacid=50577977...	0.03	OrthoFinder output from all 47 species
Ceric.38G009100.1	RPL16, Ceric.38G009100	component *(uL16c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os01g57958.1	LOC_Os01g57958	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.07	OrthoFinder output from all 47 species
LOC_Os04g16826.1	LOC_Os04g16826	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.06	OrthoFinder output from all 47 species
LOC_Os05g22724.1	LOC_Os05g22724	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.04	OrthoFinder output from all 47 species
LOC_Os10g21344.1	LOC_Os10g21344	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.06	OrthoFinder output from all 47 species
Mp1g22400.1	No alias	60S ribosomal protein L16, mitochondrial OS=Marchantia...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Solyc00g500032.1.1	RPL16, Solyc00g500032	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.04	OrthoFinder output from all 47 species
Solyc00g500077.1.1	RPL16, Solyc00g500077	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.04	OrthoFinder output from all 47 species
Solyc00g500245.1.1	Solyc00g500245	component mtRPL16 of large ribosomal subunit proteome....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	55	131

External Links

No external refs found!

Gb_40955 (RPL16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation