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  5. Gb_40437

Gb_40437 (CRR22)


Aliases : CRR22

Description : RNA editing factor (MEF3)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40437
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AT1G09410 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
AT2G37320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G05240 MEF19 mitochondrial editing factor 19 0.03 OrthoFinder output from all 47 species
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G37170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g111634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06042 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
GSVIVT01009976001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.04 OrthoFinder output from all 47 species
GSVIVT01012159001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
GSVIVT01015087001 CRR2 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
GSVIVT01015468001 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
GSVIVT01017378001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
GSVIVT01018922001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
GSVIVT01036010001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01037332001 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
Gb_09382 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_15639 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_12023g0010 No alias RNA editing factor (MEF9) 0.04 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_18383g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_215359g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_3471g0010 OTP84 RNA editing factor (MEF19) 0.07 OrthoFinder output from all 47 species
MA_3612g0010 CRR22 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
MA_376862g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
MA_503255g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_640827g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_835083g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
MA_9354530g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 259
IPR002885 Pentatricopeptide_repeat 260 288
IPR002885 Pentatricopeptide_repeat 466 513
IPR002885 Pentatricopeptide_repeat 364 412
IPR002885 Pentatricopeptide_repeat 158 206
IPR002885 Pentatricopeptide_repeat 312 351
IPR032867 DYW_dom 639 763
No external refs found!