Gb_40149 (CHMP1B, VPS46.1)


Aliases : CHMP1B, VPS46.1

Description : VPS46/CHMP1 associated protein of ESCRT-III complex


Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40149

Target Alias Description ECC score Gene Family Method Actions
AT1G73030 CHMP1A, VPS46.2 SNF7 family protein 0.03 OrthoFinder output from all 47 species
Als_g38525 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Ceric.13G020900.1 CHMP1A, VPS46.2,... associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.72 CHMP1B, VPS46.1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.01 OrthoFinder output from all 47 species
LOC_Os06g43590.2 CHMP1A, VPS46.2,... VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 OrthoFinder output from all 47 species
MA_6597368g0010 CHMP1A, VPS46.2 VPS46/CHMP1 associated protein of ESCRT-III complex 0.05 OrthoFinder output from all 47 species
Mp3g15320.1 CHMP1A, VPS46.2 VPS46/CHMP1 associated protein of ESCRT-III complex 0.04 OrthoFinder output from all 47 species
Ppi_g02615 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 11 173
No external refs found!