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  5. Gb_39522

Gb_39522


Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana (sp|q9sad9|ppr40_arath : 463.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39522

Target Alias Description ECC score Gene Family Method Actions
Gb_28709 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.08 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
MA_10433557g0010 No alias Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.05 OrthoFinder output from all 47 species
Mp2g16190.1 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from all 47 species
Zm00001e005758_P001 Zm00001e005758 Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.05 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 274 302
IPR002885 Pentatricopeptide_repeat 168 198
IPR002885 Pentatricopeptide_repeat 414 443
IPR002885 Pentatricopeptide_repeat 205 233
IPR002885 Pentatricopeptide_repeat 240 268
IPR002885 Pentatricopeptide_repeat 305 354
IPR002885 Pentatricopeptide_repeat 445 494
IPR002885 Pentatricopeptide_repeat 550 599
IPR002885 Pentatricopeptide_repeat 620 669
IPR002885 Pentatricopeptide_repeat 371 403
IPR002885 Pentatricopeptide_repeat 516 543
No external refs found!