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  5. Gb_39486

Gb_39486


Description : RING-H2 finger protein ATL16 OS=Arabidopsis thaliana (sp|q9lsw9|atl16_arath : 84.3)


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39486
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00126990 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Als_g17026 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.22G021000.1 Ceric.22G021000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.36G022900.1 Ceric.36G022900 not classified & original description: pacid=50568300... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001286.17 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021374.9 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01013145001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_05811 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Gb_14777 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_40635 RHA2A RHA2 signal transducer of abscisic acid perception 0.04 OrthoFinder output from all 47 species
LOC_Os01g16120.1 RHA2A, LOC_Os01g16120 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15120.1 ATL6, LOC_Os02g15120 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g49710.1 LOC_Os02g49710 IDF1 iron uptake IRT1-ubiquitin ligase 0.03 OrthoFinder output from all 47 species
LOC_Os05g36310.1 LOC_Os05g36310 RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g34470.1 RHA1B, LOC_Os06g34470 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g34640.1 LOC_Os06g34640 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os06g34880.1 ATL43, LOC_Os06g34880 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Len_g29872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_8338g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_92400g0010 RHA3B RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Ore_g26608 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g28091 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021081 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Sam_g35234 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc06g049030.4.1 Solyc06g049030 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g26809 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Tin_g26609 XERICO not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000396_P001 Zm00001e000396 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e001923_P001 ATL3, Zm00001e001923 RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e019779_P001 Zm00001e019779 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e037107_P001 Zm00001e037107 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e041385_P001 Zm00001e041385 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e041409_P001 BRH1, Zm00001e041409 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 90 133
No external refs found!