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  5. Gb_39426

Gb_39426


Description : gamma-aminobutyric acid transporter (GAT)


Gene families : OG0000375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000375_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39426

Target Alias Description ECC score Gene Family Method Actions
AT1G08230 No alias No description available 0.05 OrthoFinder output from all 47 species
AT5G41800 No alias Transmembrane amino acid transporter family protein 0.04 OrthoFinder output from all 47 species
Aev_g08139 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Aev_g24251 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ala_g07945 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.07 OrthoFinder output from all 47 species
Ala_g22107 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Als_g11432 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Als_g12622 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Als_g23832 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31541.t1 Aspi01Gene31541 gamma-aminobutyric acid transporter *(GAT) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene31543.t1 Aspi01Gene31543 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32439.t1 Aspi01Gene32439 gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene62337.t1 Aspi01Gene62337 gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene71605.t1 Aspi01Gene71605 gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Cba_g30721 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Cba_g35070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g53669 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G109600.1 Ceric.01G109600 gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G010300.1 Ceric.05G010300 gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G010400.1 Ceric.05G010400 gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g08836 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g16650 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g19885 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g34391 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g36639 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g39908 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Dde_g11745 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g11979 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031408001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
GSVIVT01034728001 No alias Solute transport.carrier-mediated transport.APC... 0.06 OrthoFinder output from all 47 species
GSVIVT01034729001 No alias Solute transport.carrier-mediated transport.APC... 0.05 OrthoFinder output from all 47 species
GSVIVT01034731001 No alias Solute transport.carrier-mediated transport.APC... 0.02 OrthoFinder output from all 47 species
Gb_39427 No alias gamma-aminobutyric acid transporter (GAT) 0.04 OrthoFinder output from all 47 species
LOC_Os01g43320.1 LOC_Os01g43320 gamma-aminobutyric acid transporter (GAT) 0.07 OrthoFinder output from all 47 species
LOC_Os01g63854.1 LOC_Os01g63854 gamma-aminobutyric acid transporter (GAT) 0.04 OrthoFinder output from all 47 species
Len_g03277 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Len_g13839 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Len_g20418 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Len_g20422 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
MA_95623g0010 No alias gamma-aminobutyric acid transporter (GAT) 0.03 OrthoFinder output from all 47 species
Mp5g14240.1 No alias gamma-aminobutyric acid transporter (GAT) 0.02 OrthoFinder output from all 47 species
Msp_g05142 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Pir_g08627 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Pir_g58528 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g28801 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.01 OrthoFinder output from all 47 species
Sam_g30264 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Solyc08g082080.3.1 Solyc08g082080 gamma-aminobutyric acid transporter (GAT) 0.02 OrthoFinder output from all 47 species
Solyc11g066800.2.1 Solyc11g066800 gamma-aminobutyric acid transporter (GAT) 0.02 OrthoFinder output from all 47 species
Spa_g17756 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Spa_g20862 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Tin_g07234 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 36 443
No external refs found!