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  5. Gb_39269

Gb_39269


Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 134.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39269
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 OrthoFinder output from all 47 species
AT1G78260 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 OrthoFinder output from all 47 species
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Ala_g19204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g26221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009045001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01016345001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g65550.1 LOC_Os01g65550 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72834.1 LOC_Os01g72834 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os03g17760.1 LOC_Os03g17760 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g11730.1 LOC_Os06g11730 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003275 No alias not classified & original description: CDS=1-1056 0.05 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc04g074310.4.1 Solyc04g074310 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g08652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001294_P001 Zm00001e001294 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e019085_P001 Zm00001e019085 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e023856_P001 Zm00001e023856 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e030837_P006 Zm00001e030837 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 28 83
No external refs found!