Gb_38779

Description : ubiquitin E3 ligase (CERBERUS/LIN)

Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38779
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00231470	evm_27.TU.AmTr_v1...	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.03	OrthoFinder output from all 47 species
AMTR_s00109p00103350	evm_27.TU.AmTr_v1...	External stimuli response.biotic...	0.03	OrthoFinder output from all 47 species
GSVIVT01015355001	No alias	External stimuli response.biotic...	0.03	OrthoFinder output from all 47 species
GSVIVT01035145001	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.03	OrthoFinder output from all 47 species
LOC_Os05g30010.1	LOC_Os05g30010	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.02	OrthoFinder output from all 47 species
MA_87817g0010	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.04	OrthoFinder output from all 47 species
Pir_g49606	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	489	559
IPR001680	WD40_repeat	1226	1260

External Links

No external refs found!