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  5. Gb_38248

Gb_38248 (CRR22)


Aliases : CRR22

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 629.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Aev_g18166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21001 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13601 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28706 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38453 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g06983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25304 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G053200.1 Ceric.07G053200 not classified & original description: pacid=50626825... 0.04 OrthoFinder output from all 47 species
Ceric.07G067300.1 Ceric.07G067300 not classified & original description: pacid=50625994... 0.05 OrthoFinder output from all 47 species
Ceric.27G069000.1 Ceric.27G069000 not classified & original description: pacid=50605685... 0.04 OrthoFinder output from all 47 species
Ceric.35G058500.1 Ceric.35G058500 not classified & original description: pacid=50581681... 0.04 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.06 OrthoFinder output from all 47 species
Dac_g05152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g15843 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
Gb_02573 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_02808 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Gb_03691 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.06 OrthoFinder output from all 47 species
Gb_06568 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.05 OrthoFinder output from all 47 species
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_07336 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_07570 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_08964 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_09654 No alias RNA editing factor (MEF13) 0.06 OrthoFinder output from all 47 species
Gb_11389 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_13227 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_15506 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_15644 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_15797 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_17294 CRR2 RNA editing factor (MEF3) 0.07 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_19924 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.08 OrthoFinder output from all 47 species
Gb_21064 CRR22 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_22477 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.07 OrthoFinder output from all 47 species
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_23934 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_25737 MEF1 RNA editing factor (MEF1) 0.07 OrthoFinder output from all 47 species
Gb_26130 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_27521 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.09 OrthoFinder output from all 47 species
Gb_28758 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 OrthoFinder output from all 47 species
Gb_28764 CRR2 RNA editing factor (MEF1) 0.07 OrthoFinder output from all 47 species
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_28775 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_28780 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_29868 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_29872 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_29878 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
Gb_31319 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_33311 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Gb_33367 No alias RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_33719 No alias RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_33727 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_36085 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_36177 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.05 OrthoFinder output from all 47 species
Gb_36178 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 OrthoFinder output from all 47 species
Gb_38292 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_38750 No alias RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_39702 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 OrthoFinder output from all 47 species
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.05 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
Msp_g12042 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17454 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17708 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46086 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48594 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11891 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g081560.2.1 Solyc01g081560 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc01g099000.1.1 Solyc01g099000 Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
Solyc03g093630.3.1 CRR2, Solyc03g093630 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Solyc04g074160.3.1 Solyc04g074160 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc04g076330.3.1 CRR22, Solyc04g076330 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Solyc05g046280.3.1 Solyc05g046280 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Solyc06g048900.1.1 Solyc06g048900 Pentatricopeptide repeat-containing protein At2g40720... 0.03 OrthoFinder output from all 47 species
Solyc06g064600.1.1 Solyc06g064600 Pentatricopeptide repeat-containing protein At1g56690,... 0.05 OrthoFinder output from all 47 species
Solyc06g082880.2.1 Solyc06g082880 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Solyc09g065710.1.1 OTP86, Solyc09g065710 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Tin_g06129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06435 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10643 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27970 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30136 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 517 540
IPR002885 Pentatricopeptide_repeat 113 138
IPR002885 Pentatricopeptide_repeat 441 490
IPR002885 Pentatricopeptide_repeat 139 186
IPR002885 Pentatricopeptide_repeat 239 287
IPR002885 Pentatricopeptide_repeat 341 388
IPR032867 DYW_dom 615 739
No external refs found!