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  5. Gb_38136

Gb_38136


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 164.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38136
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Adi_g036806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g040367 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g044522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g073087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g097485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g10343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g24714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g26449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g26988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35825 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g36860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40244 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g40414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g41447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g41986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g44945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46334 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g47641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06149 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16692 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25788 ORF120 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36443 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g65247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01816.t1 Aspi01Gene01816 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11135.t1 Aspi01Gene11135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13677.t1 ORF120, Aspi01Gene13677 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15115.t1 CRK8, Aspi01Gene15115 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16407.t1 Aspi01Gene16407 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16455.t1 ORF120, Aspi01Gene16455 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16660.t1 Aspi01Gene16660 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17595.t1 Aspi01Gene17595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20450.t1 Aspi01Gene20450 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25751.t1 ORF120, Aspi01Gene25751 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29587.t1 Aspi01Gene29587 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33395.t1 ORF120, Aspi01Gene33395 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35033.t1 ORF120, Aspi01Gene35033 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37237.t1 Aspi01Gene37237 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37633.t1 Aspi01Gene37633 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene38380.t1 Aspi01Gene38380 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39236.t1 Aspi01Gene39236 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43234.t1 Aspi01Gene43234 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46271.t1 Aspi01Gene46271 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58469.t1 Aspi01Gene58469 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58836.t1 Aspi01Gene58836 component *(COG8) of COG (Conserved-Oligomeric Golgi)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63791.t1 Aspi01Gene63791 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene65786.t1 Aspi01Gene65786 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene71961.t1 Aspi01Gene71961 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15333 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g24305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32961 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g48953 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g24645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35635 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40272 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g24035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_00777 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_05081 ORF120 Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_05523 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_08105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 OrthoFinder output from all 47 species
Gb_08402 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_13962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_23548 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_26132 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_26975 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_30261 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_30314 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_34551 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_37606 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_40384 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_41335 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Msp_g34969 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g45324 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g46637 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g40248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g02239 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g05219 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c16_770V3.1 Pp3c16_770 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c22_8150V3.1 Pp3c22_8150 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c24_5020V3.1 Pp3c24_5020 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c25_11001V3.1 Pp3c25_11001 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c25_8680V3.1 Pp3c25_8680 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c26_1660V3.1 Pp3c26_1660 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c26_8890V3.1 Pp3c26_8890 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c4_23690V3.1 Pp3c4_23690 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c5_24700V3.1 Pp3c5_24700 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c8_9221V3.1 Pp3c8_9221 No annotation 0.02 OrthoFinder output from all 47 species
Ppi_g38070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 60 110
IPR001584 Integrase_cat-core 123 239
No external refs found!