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  5. Gb_38048

Gb_38048


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 184.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38048

Target Alias Description ECC score Gene Family Method Actions
Adi_g040367 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g044521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g19508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43660 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77105 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g41075 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g20048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24494 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28000 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g31087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_06978 ORF145A Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_20680 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 OrthoFinder output from all 47 species
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_23548 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_25092 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_26132 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_26975 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_27233 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_29919 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_34551 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_36581 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_37614 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 OrthoFinder output from all 47 species
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_39504 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Ore_g28511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 135 186
IPR001584 Integrase_cat-core 200 315
No external refs found!