Gb_36024 (MCM4)


Aliases : MCM4

Description : component MCM4 of MCM replicative DNA helicase complex


Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36024
Cluster HCCA: Cluster_141

</tr> <tr> <td><a href="/sequence/view/1696472" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1696472">Solyc01g110130.3.1</a></td> <td>MCM4, Solyc01g110130</td> <td>component MCM4 of MCM replicative DNA helicase complex</td> <td>0.09</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179812" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2055496" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2055496">Spa_g10751</a></td> <td>MCM4</td> <td>component *(MCM4) of MCM replicative DNA helicase...</td> <td>0.11</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179814" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2056672" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2056672">Spa_g11927</a></td> <td>MCM7, PRL</td> <td>not classified & original description: none</td> <td>0.11</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179816" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2056673" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2056673">Spa_g11928</a></td> <td>MCM7, PRL</td> <td>component *(MCM7) of MCM replicative DNA helicase...</td> <td>0.1</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179818" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2089154" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2089154">Spa_g44409</a></td> <td>MCM4</td> <td>component *(MCM4) of MCM replicative DNA helicase...</td> <td>0.03</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179820" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/555259" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/555259">Tin_g06082</a></td> <td>MCM7, PRL</td> <td>component *(MCM7) of MCM replicative DNA helicase...</td> <td>0.11</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179822" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/561341" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/561341">Tin_g12164</a></td> <td>MCM4</td> <td>component *(MCM4) of MCM replicative DNA helicase...</td> <td>0.1</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179824" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1470358" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1470358">Zm00001e002873_P001</a></td> <td>MCM7, PRL, Zm00001e002873</td> <td>component MCM7 of MCM replicative DNA helicase complex</td> <td>0.18</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179826" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1485399" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1485399">Zm00001e018214_P001</a></td> <td>MCM7, PRL, Zm00001e018214</td> <td>component MCM7 of MCM replicative DNA helicase complex</td> <td>0.2</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179828" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1493361" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1493361">Zm00001e026379_P001</a></td> <td>MCM4, Zm00001e026379</td> <td>component MCM4 of MCM replicative DNA helicase complex</td> <td>0.16</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/40179830" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/1461835/66/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/135" data-toggle="tooltip" data-placement="top" title=""Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose." [GOC:mah, ISBN:0198547684]">GO:0000166</a></td> <td class="col-xs-6">nucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2629" data-toggle="tooltip" data-placement="top" title=""A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt]">GO:0003674</a></td> <td class="col-xs-6">molecular_function</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2631" data-toggle="tooltip" data-placement="top" title=""Binding to a nucleic acid." [GOC:jl]">GO:0003676</a></td> <td class="col-xs-6">nucleic acid binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2632" data-toggle="tooltip" data-placement="top" title=""Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid)." [GOC:dph, GOC:jl, GOC:tb, GOC:vw]">GO:0003677</a></td> <td class="col-xs-6">DNA binding</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4090" data-toggle="tooltip" data-placement="top" title=""The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732]">GO:0005488</a></td> <td class="col-xs-6">binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4117" data-toggle="tooltip" data-placement="top" title=""Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [ISBN:0198506732]">GO:0005524</a></td> <td class="col-xs-6">ATP binding</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4669" data-toggle="tooltip" data-placement="top" title=""Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:ai]">GO:0006139</a></td> <td class="col-xs-6">nucleobase-containing compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4782" data-toggle="tooltip" data-placement="top" title=""Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." [ISBN:0198506732]">GO:0006259</a></td> <td class="col-xs-6">DNA metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4791" data-toggle="tooltip" data-placement="top" title=""The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate." [ISBN:071673706X, ISBN:0815316194, PMID:28209641]">GO:0006270</a></td> <td class="col-xs-6">DNA replication initiation</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5195" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells." [GOC:ai, ISBN:0198506732]">GO:0006725</a></td> <td class="col-xs-6">cellular aromatic compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5266" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen." [GOC:jl, ISBN:0198506732]">GO:0006807</a></td> <td class="col-xs-6">nitrogen compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6130" data-toggle="tooltip" data-placement="top" title=""A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]">GO:0008150</a></td> <td class="col-xs-6">biological_process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6131" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684]">GO:0008152</a></td> <td class="col-xs-6">metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7802" data-toggle="tooltip" data-placement="top" title=""Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]">GO:0009987</a></td> <td class="col-xs-6">cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10739" data-toggle="tooltip" data-placement="top" title=""Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate." [GOC:ai]">GO:0017076</a></td> <td class="col-xs-6">purine nucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13876" data-toggle="tooltip" data-placement="top" title=""Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosphate." [ISBN:0198506732]">GO:0030554</a></td> <td class="col-xs-6">adenyl nucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/15747" data-toggle="tooltip" data-placement="top" title=""Binding to a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah]">GO:0032553</a></td> <td class="col-xs-6">ribonucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/15749" data-toggle="tooltip" data-placement="top" title=""Binding to a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah]">GO:0032555</a></td> <td class="col-xs-6">purine ribonucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/15753" data-toggle="tooltip" data-placement="top" title=""Binding to an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah]">GO:0032559</a></td> <td class="col-xs-6">adenyl ribonucleotide binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17746" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells." [GOC:mah]">GO:0034641</a></td> <td class="col-xs-6">cellular nitrogen compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/18685" data-toggle="tooltip" data-placement="top" title=""Binding to a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:BHF, GOC:ebc, ISBN:0198506732]">GO:0035639</a></td> <td class="col-xs-6">purine ribonucleoside triphosphate binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/19132" data-toggle="tooltip" data-placement="top" title=""Binding to a small molecule, any low molecular weight, monomeric, non-encoded molecule." [GOC:curators, GOC:pde, GOC:pm]">GO:0036094</a></td> <td class="col-xs-6">small molecule binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/21008" data-toggle="tooltip" data-placement="top" title=""Binding to an ion, a charged atoms or groups of atoms." [GOC:jl]">GO:0043167</a></td> <td class="col-xs-6">ion binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/21009" data-toggle="tooltip" data-placement="top" title=""Binding to an anion, a charged atom or group of atoms with a net negative charge." [GOC:jl]">GO:0043168</a></td> <td class="col-xs-6">anion binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21011" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:mah]">GO:0043170</a></td> <td class="col-xs-6">macromolecule metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21980" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators]">GO:0044237</a></td> <td class="col-xs-6">cellular metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21981" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org]">GO:0044238</a></td> <td class="col-xs-6">primary metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21994" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells." [GOC:mah]">GO:0044260</a></td> <td class="col-xs-6">cellular macromolecule metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/23852" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings)." [ISBN:0198506732]">GO:0046483</a></td> <td class="col-xs-6">heterocycle metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/32691" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." [GOC:mah]">GO:0071704</a></td> <td class="col-xs-6">organic substance metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/34597" data-toggle="tooltip" data-placement="top" title=""Any cellular metabolic process involving nucleic acids." [GOC:dph, GOC:tb]">GO:0090304</a></td> <td class="col-xs-6">nucleic acid metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/35164" data-toggle="tooltip" data-placement="top" title=""Binding to an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure." [GOC:sjw, PMID:7583672]">GO:0097159</a></td> <td class="col-xs-6">organic cyclic compound binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/35367" data-toggle="tooltip" data-placement="top" title=""Binding to a carbohydrate derivative." [GOC:pr]">GO:0097367</a></td> <td class="col-xs-6">carbohydrate derivative binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/40714" data-toggle="tooltip" data-placement="top" title=""Binding to nucleoside phosphate." [GOC:TermGenie]">GO:1901265</a></td> <td class="col-xs-6">nucleoside phosphate binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/40807" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving organic cyclic compound." [GOC:TermGenie]">GO:1901360</a></td> <td class="col-xs-6">organic cyclic compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/40810" data-toggle="tooltip" data-placement="top" title=""Binding to heterocyclic compound." [GOC:TermGenie]">GO:1901363</a></td> <td class="col-xs-6">heterocyclic compound binding</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4783" data-toggle="tooltip" data-placement="top" title=""The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA." [GOC:mah]">GO:0006260</a></td> <td class="col-xs-6">DNA replication</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4796" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of DNA replication." [GOC:go_curators]">GO:0006275</a></td> <td class="col-xs-6">regulation of DNA replication</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4865" data-toggle="tooltip" data-placement="top" title=""Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules." [GOC:curators]">GO:0006364</a></td> <td class="col-xs-6">rRNA processing</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/9916" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes." [ISBN:0198506732]">GO:0016072</a></td> <td class="col-xs-6">rRNA metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/13992" data-toggle="tooltip" data-placement="top" title=""Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis." [PMID:10567516]">GO:0030684</a></td> <td class="col-xs-6">preribosome</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/13996" data-toggle="tooltip" data-placement="top" title=""A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit." [PMID:10567516]">GO:0030688</a></td> <td class="col-xs-6">preribosome, small subunit precursor</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17587" data-toggle="tooltip" data-placement="top" title=""Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules." [GOC:mah, PMID:27573892]">GO:0034470</a></td> <td class="col-xs-6">ncRNA processing</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17765" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs)." [GOC:mah]">GO:0034660</a></td> <td class="col-xs-6">ncRNA metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27125" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA." [GOC:ai]">GO:0051052</a></td> <td class="col-xs-6">regulation of DNA metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/46053" data-toggle="tooltip" data-placement="top" title=""A macromolecular complex that contains both RNA and protein molecules." [GOC:krc, GOC:vesicles]">GO:1990904</a></td> <td class="col-xs-6">ribonucleoprotein complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/994">IPR001208</a></td> <td class="col-xs-5">MCM_dom</td> <td class="col-xs-2">413</td> <td class="col-xs-2">635</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/26666">IPR033762</a></td> <td class="col-xs-5">MCM_OB</td> <td class="col-xs-2">220</td> <td class="col-xs-2">349</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/23127">IPR027925</a></td> <td class="col-xs-5">MCM_N</td> <td class="col-xs-2">124</td> <td class="col-xs-2">202</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/33415">IPR041562</a></td> <td class="col-xs-5">MCM_lid</td> <td class="col-xs-2">651</td> <td class="col-xs-2">737</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00128450 MCM4,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.15 OrthoFinder output from all 47 species
AMTR_s00008p00218750 MCM9,... Cell cycle.interphase.DNA replication.initiation.MCM8-9... 0.04 OrthoFinder output from all 47 species
AMTR_s00057p00030490 MCM7, PRL,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.06 OrthoFinder output from all 47 species
AT2G16440 MCM4 Minichromosome maintenance (MCM2/3/5) family protein 0.09 OrthoFinder output from all 47 species
AT4G02060 MCM7, PRL Minichromosome maintenance (MCM2/3/5) family protein 0.12 OrthoFinder output from all 47 species
Ala_g24409 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ala_g28206 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Als_g03794 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Als_g06966 MCM4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07824 MCM4 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g07825 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.12 OrthoFinder output from all 47 species
Als_g11754 MCM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09863 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.13 OrthoFinder output from all 47 species
Aop_g23244 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.13 OrthoFinder output from all 47 species
Aspi01Gene22827.t1 MCM4, Aspi01Gene22827 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Aspi01Gene25633.t1 MCM4, Aspi01Gene25633 component *(MCM4) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Aspi01Gene25932.t1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Azfi_s0544.g076399 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.1 OrthoFinder output from all 47 species
Ceric.04G002100.1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.12 OrthoFinder output from all 47 species
Ceric.10G009500.1 MCM4, Ceric.10G009500 component *(MCM4) of MCM replicative DNA helicase... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.164 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.38 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder output from all 47 species
Cre07.g316850 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.1 OrthoFinder output from all 47 species
Cre10.g455850 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.12 OrthoFinder output from all 47 species
Cre12.g540927 MCM9 Probable DNA helicase MCM9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g06469 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.11 OrthoFinder output from all 47 species
Dac_g14939 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Dac_g15991 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Dcu_g05722 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Dcu_g40402 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
GSVIVT01024207001 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.2 OrthoFinder output from all 47 species
GSVIVT01028118001 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.18 OrthoFinder output from all 47 species
LOC_Os01g36390.1 MCM4, LOC_Os01g36390 component MCM4 of MCM replicative DNA helicase complex 0.12 OrthoFinder output from all 47 species
LOC_Os12g37400.1 MCM7, PRL, LOC_Os12g37400 component MCM7 of MCM replicative DNA helicase complex 0.18 OrthoFinder output from all 47 species
Len_g00736 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Len_g11914 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Lfl_g19272 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Lfl_g39364 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
MA_10426237g0010 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.19 OrthoFinder output from all 47 species
MA_10434231g0010 MCM4 DNA replication licensing factor MCM4 OS=Oryza sativa... 0.19 OrthoFinder output from all 47 species
Mp2g02600.1 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.13 OrthoFinder output from all 47 species
Mp3g02380.1 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.13 OrthoFinder output from all 47 species
Mp4g02430.1 MCM9 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.11 OrthoFinder output from all 47 species
Msp_g06139 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Msp_g09222 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Nbi_g03098 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.14 OrthoFinder output from all 47 species
Nbi_g04377 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.11 OrthoFinder output from all 47 species
Ore_g29782 MCM9 component *(MCM9) of MCM8-9 cell cycle auxiliary complex... 0.03 OrthoFinder output from all 47 species
Ppi_g01337 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ppi_g25980 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004187 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0298.g027193 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Sam_g06717 No alias component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Sam_g09734 No alias component *(MCM7) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Sam_g27151 No alias component *(MCM7) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Solyc01g079500.4.1 MCM7, PRL, Solyc01g079500 component MCM7 of MCM replicative DNA helicase complex 0.14 OrthoFinder output from all 47 species
Solyc01g105520.3.1 MCM9, Solyc01g105520 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.03 OrthoFinder output from all 47 species