Gb_35988 (SNL4)

Aliases : SNL4

Description : component SNL of histone deacetylase machineries

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_35988

Target	Alias	Description	ECC score	Gene Family Method
AT1G10450	SNL6	SIN3-like 6	0.03	OrthoFinder output from all 47 species
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.1	OrthoFinder output from all 47 species
AT1G59890	SNL5	SIN3-like 5	0.03	OrthoFinder output from all 47 species
AT3G01320	SNL1	SIN3-like 1	0.06	OrthoFinder output from all 47 species
AT5G15020	SNL2	SIN3-like 2	0.11	OrthoFinder output from all 47 species
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Adi_g058426	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Adi_g088432	SNL3, ATSIN3, SIN3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g103364	SNL4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g21851	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ala_g17667	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Als_g22302	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Als_g52098	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Aob_g29157	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Aop_g00817	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009798	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Azfi_s0008.g011658	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.02G103800.1	SNL4, Ceric.02G103800	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.01	OrthoFinder output from all 47 species
Cre03.g180800	SNL4	Paired amphipathic helix protein Sin3-like 4...	0.02	OrthoFinder output from all 47 species
Dcu_g18941	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Ehy_g10035	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
GSVIVT01020136001	SNL3, ATSIN3, SIN3	Chromatin organisation.histone modifications.histone...	0.05	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.09	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Len_g04844	SNL4	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Len_g58076	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Lfl_g03500	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Lfl_g03517	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.06	OrthoFinder output from all 47 species
MA_18241g0010	SNL4	component SNL of histone deacetylase machineries	0.07	OrthoFinder output from all 47 species
Mp3g02880.1	SNL4	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Mp6g11860.1	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 3...	0.02	OrthoFinder output from all 47 species
Mp7g11300.1	SNL5	Paired amphipathic helix protein Sin3-like 2...	0.05	OrthoFinder output from all 47 species
Msp_g06593	SNL4	component *(SNL) of histone deacetylase machineries &...	0.08	OrthoFinder output from all 47 species
Msp_g24890	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ore_g28709	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30141	SNL2	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Ore_g35781	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18041	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ppi_g09115	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.09	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.06	OrthoFinder output from all 47 species
Smo440352	SNL4	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Solyc02g087360.4.1	SNL2, Solyc02g087360	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Spa_g18268	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Tin_g19320	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.08	OrthoFinder output from all 47 species
Zm00001e025644_P001	SNL4, Zm00001e025644	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	624	725
IPR003822	PAH	235	279
IPR003822	PAH	459	503
IPR003822	PAH	149	193
IPR031693	Sin3_C	1311	1572

External Links

No external refs found!

Gb_35988 (SNL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation