LOC_Os03g11540 (Os03g0214100)


Aliases : Os03g0214100

Description : 28.1 DNA.synthesis/chromatin structure Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. RPA70-kDa subunit B (RPA70B)


Gene families : OG_01_0001582 (Gene family) Phylogenetic Tree(s): OG0001582_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os03g11540
Cluster HCCA cluster: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT5G08020 RPA70B, ATRPA70B RPA70-kDa subunit B 0.22 Gene family
AT5G61000 RPA70D, ATRPA70D Replication factor-A protein 1-related 0.19 Gene family
Cre16.g651000 No alias 27.1.2 RNA.processing.RNA helicase RPA70D 0.03 Gene family
GSVIVT01007849001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.14 Gene family
MA_10327014g0020 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.02 Gene family
MA_10328650g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.03 Gene family
MA_10331305g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.09 Gene family
MA_10356314g0020 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.04 Gene family
MA_177350g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.09 Gene family
Solyc03g115050.3.1 Solyc03g115050.3 28.1 DNA.synthesis/chromatin structure Encodes a homolog... 0.17 Gene family
Zm00001d028210 GRMZM2G098714 27.1.2 RNA.processing.RNA helicase RPA70D 0.13 Gene family
Zm00001d048086 GRMZM2G086934 27.1.2 RNA.processing.RNA helicase RPA70D 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR031657 REPA_OB_2 319 412
IPR013955 Rep_factor-A_C 475 620
IPR007199 Rep_factor-A_N 9 109
IPR004365 NA-bd_OB_tRNA 200 280
No external refs found!