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Gb_35329


Description : Cold shock protein 1 OS=Arabidopsis thaliana (sp|o65639|csp1_arath : 111.0)


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35329
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00201p00015360 evm_27.TU.AmTr_v1... Cold shock protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Sam_g13975 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05865 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51868 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 147 163
IPR001878 Znf_CCHC 218 234
IPR001878 Znf_CCHC 166 182
IPR001878 Znf_CCHC 64 79
IPR001878 Znf_CCHC 46 61
IPR001878 Znf_CCHC 199 214
IPR001878 Znf_CCHC 102 117
IPR001878 Znf_CCHC 84 98
No external refs found!