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  5. Gb_35219

Gb_35219


Description : Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana (sp|q3e9f0|pp392_arath : 374.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00104950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.06 OrthoFinder output from all 47 species
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.06 OrthoFinder output from all 47 species
AMTR_s00062p00111890 PPR336,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.04 OrthoFinder output from all 47 species
AMTR_s00135p00057260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g18475... 0.02 OrthoFinder output from all 47 species
AT1G11630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.05 OrthoFinder output from all 47 species
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.07 OrthoFinder output from all 47 species
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 OrthoFinder output from all 47 species
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.06 OrthoFinder output from all 47 species
LOC_Os01g58080.1 PPR336, LOC_Os01g58080 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.04 OrthoFinder output from all 47 species
MA_60265g0010 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.08 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.04 OrthoFinder output from all 47 species
Solyc07g045380.3.1 Solyc07g045380 Pentatricopeptide repeat-containing protein At1g05600... 0.04 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.04 OrthoFinder output from all 47 species
Solyc11g073230.1.1 Solyc11g073230 Pentatricopeptide repeat-containing protein At1g07740,... 0.03 OrthoFinder output from all 47 species
Solyc12g014330.1.1 Solyc12g014330 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc12g035170.3.1 Solyc12g035170 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Zm00001e019591_P001 PPR336, Zm00001e019591 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 453 498
IPR002885 Pentatricopeptide_repeat 239 287
IPR002885 Pentatricopeptide_repeat 344 393
IPR002885 Pentatricopeptide_repeat 418 447
IPR033443 PPR_long 77 200
IPR002885 Pentatricopeptide_repeat 305 337
IPR002885 Pentatricopeptide_repeat 202 233
No external refs found!