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  5. Gb_35181

Gb_35181 (CHR5)


Aliases : CHR5

Description : chromatin remodeling factor (Chd1). component CHR5 of SAGA transcription co-activator complex


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00098350 CHR5,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00173840 CHR17,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00165640 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
AMTR_s00090p00148990 SYD, CHR3,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT2G13370 CHR5 chromatin remodeling 5 0.05 OrthoFinder output from all 47 species
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 OrthoFinder output from all 47 species
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 OrthoFinder output from all 47 species
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.06 OrthoFinder output from all 47 species
Adi_g104730 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g41954 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ala_g11507 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01984 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Als_g06850 PKR1, CHR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16533 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20612 PKR1, CHR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56902 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aob_g29249 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Aop_g05323 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70267.t1 Aspi01Gene70267 chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013433 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Azfi_s0129.g048917 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ceric.10G020300.1 CHR5, Ceric.10G020300 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ceric.36G015700.1 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Ceric.37G008600.1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000350.9 PKR2 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Dcu_g03216 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42511 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09827 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15247 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g07066 ATCHR12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26944 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01037235001 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
LOC_Os05g05230.1 ATCHR12, LOC_Os05g05230 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species
LOC_Os06g08480.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.05 OrthoFinder output from all 47 species
Len_g08675 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02374 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06769 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Lfl_g16058 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Lfl_g30624 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
MA_8926002g0010 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.04 OrthoFinder output from all 47 species
Mp1g05480.1 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.03 OrthoFinder output from all 47 species
Mp2g26680.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Nbi_g02510 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Nbi_g12189 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.07 OrthoFinder output from all 47 species
Ore_g12701 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12901 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ore_g25685 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ore_g29874 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ore_g36640 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05325 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981 PKL, GYM, CHR6,... WRKY-type transcription factor & original description: CDS=1-4410 0.03 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Sam_g36172 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo155996 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo440203 CHR11 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Smo440815 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Solyc06g065730.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Solyc11g062010.3.1 SYD, CHR3, Solyc11g062010 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species
Solyc12g099910.2.1 CHR5, Solyc12g099910 chromatin remodeling factor (Chd1). component CHR5 of... 0.03 OrthoFinder output from all 47 species
Spa_g17788 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010908_P001 CHR5, Zm00001e010908 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e030969_P003 SYD, CHR3, Zm00001e030969 chromatin remodeling factor (Snf2) 0.07 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR015195 SLIDE 921 986
IPR001650 Helicase_C 510 623
IPR023780 Chromo_domain 102 156
IPR000330 SNF2_N 209 481
No external refs found!