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  5. Gb_33641

Gb_33641


Description : flap structure-specific endonuclease (FEN1). flap structure-specific endonuclease (FEN1)


Gene families : OG0002365 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002365_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33641
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT5G26680 No alias 5'-3' exonuclease family protein 0.03 OrthoFinder output from all 47 species
Als_g28695 No alias flap structure-specific endonuclease *(FEN1) & original... 0.03 OrthoFinder output from all 47 species
Aop_g07465 No alias flap structure-specific endonuclease *(FEN1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29770.t2 Aspi01Gene29770 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G066100.1 Ceric.05G066100 flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001214.13 No alias DNA damage response.DNA repair mechanisms.base excision... 0.05 OrthoFinder output from all 47 species
Cre03.g145687 No alias DNA damage response.DNA repair mechanisms.base excision... 0.04 OrthoFinder output from all 47 species
Dcu_g04637 No alias flap structure-specific endonuclease *(FEN1) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os05g46270.1 LOC_Os05g46270 flap structure-specific endonuclease (FEN1). flap... 0.04 OrthoFinder output from all 47 species
MA_9716862g0010 No alias flap structure-specific endonuclease (FEN1). flap... 0.05 OrthoFinder output from all 47 species
MA_9971131g0010 No alias flap structure-specific endonuclease (FEN1). flap... 0.11 OrthoFinder output from all 47 species
Mp8g12390.1 No alias flap structure-specific endonuclease (FEN1). flap... 0.06 OrthoFinder output from all 47 species
Msp_g12044 No alias flap structure-specific endonuclease *(FEN1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g21086 No alias flap structure-specific endonuclease *(FEN1) & original... 0.07 OrthoFinder output from all 47 species
Sam_g27115 No alias flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g102370.4.1 Solyc01g102370 flap structure-specific endonuclease (FEN1). flap... 0.1 OrthoFinder output from all 47 species
Spa_g00952 No alias flap structure-specific endonuclease *(FEN1) & original... 0.07 OrthoFinder output from all 47 species
Spa_g48322 No alias flap structure-specific endonuclease *(FEN1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 147 234
IPR006085 XPG_DNA_repair_N 1 107
No external refs found!