Mp3g15530.1


Description : subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V RNA polymerase


Gene families : OG_01_0000599 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000599_tree ,
OG_02_0004225 (LandPlants) Phylogenetic Tree(s): OG_02_0004225_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g15530.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
AMTR_s00131p00068700 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Cpa|evm.model.tig00000241.15 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Cpa|evm.model.tig00022075.6 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Cre16.g680900 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01019869001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Gb_06029 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.04 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.04 Archaeplastida
LOC_Os05g05860.1 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.06 Archaeplastida
Pp3c17_3180V3.1 No alias nuclear RNA polymerase D1A 0.01 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.03 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.05 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Zm00001e007729_P001 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
AMTR_s00131p00068700 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 LandPlants
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.03 LandPlants
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.03 LandPlants
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.06 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 16 400
IPR007083 RNA_pol_Rpb1_4 921 966
IPR007066 RNA_pol_Rpb1_3 674 820
IPR007081 RNA_pol_Rpb1_5 1002 1457
IPR000722 RNA_pol_asu 505 670
No external refs found!