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  5. Gb_32192

Gb_32192


Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_32192
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00102360 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula 0.04 OrthoFinder output from all 47 species
Cre12.g507200 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os01g12930.1 LOC_Os01g12930 ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
Mp3g09570.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 277 300
IPR001680 WD40_repeat 309 343
IPR001680 WD40_repeat 524 553
No external refs found!