Gb_31704

Description : component RPA3 of single-stranded-DNA binding RPA complex. component RPA3 of RPA presynaptic filament assembly factor complex

Gene families : OG0005363 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005363_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_31704
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AT3G52630	No alias	Nucleic acid-binding, OB-fold-like protein	0.12	OrthoFinder output from all 47 species
Ceric.04G020400.1	Ceric.04G020400	component *(RPA3) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000718.65	No alias	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01000981001	No alias	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.06	OrthoFinder output from all 47 species
Mp8g07790.1	No alias	component RPA3 of single-stranded-DNA binding RPA...	0.05	OrthoFinder output from all 47 species
Sam_g07233	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Spa_g18698	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Tin_g00374	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013970	Rfa2	1	102

External Links

No external refs found!

Gb_31704

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation