LOC_Os03g06670 (Os03g0162200)

Aliases : Os03g0162200

Description : DNA.synthesis/chromatin structure.histone.core.H2A Encodes HTA11, a histone H2A protein. histone H2A 11 (HTA11)

Gene families : OG_01_0001029 (Gene family) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os03g06670
Cluster HCCA cluster: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT2G38810 HTA8 histone H2A 8 0.04 Gene family
AT3G54560 HTA11 histone H2A 11 0.16 Gene family
Cpa|evm.model.tig00021108.27 No alias DNA.synthesis/chromatin... 0.02 Gene family
Cre13.g567700 No alias DNA.synthesis/chromatin... 0.01 Gene family
GSVIVT01003139001 No alias DNA.synthesis/chromatin... 0.11 Gene family
Solyc06g084090.3.1 Solyc06g084090.3 DNA.synthesis/chromatin... 0.09 Gene family
Solyc09g065755.1.1 Solyc09g065755.1 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d013300 GRMZM2G050833 DNA.synthesis/chromatin... 0.01 Gene family
Zm00001d027760 GRMZM2G056231 DNA.synthesis/chromatin... 0.13 Gene family
Zm00001d033979 GRMZM2G149775 DNA.synthesis/chromatin... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 108 137
IPR007125 Histone_H2A/H2B/H3 13 107
No external refs found!