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  5. Gb_31034

Gb_31034


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 713.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31034

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g005728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005790 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g043352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06397 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68065 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24113.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10212 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g26408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_04419 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_05116 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_05354 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_05488 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_07756 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_08029 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_09382 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_18979 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_21441 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_22740 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At1g15510,... 0.05 OrthoFinder output from all 47 species
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_27329 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_29543 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_32077 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_35258 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_41341 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Msp_g28761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43041 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15421 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27954 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03395 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57077 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01154 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136851 CRR2 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Solyc01g098150.3.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.04 OrthoFinder output from all 47 species
Solyc09g065840.3.1 OSB1, Solyc09g065840 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26191 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.02 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 232 279
IPR002885 Pentatricopeptide_repeat 130 178
IPR002885 Pentatricopeptide_repeat 635 683
IPR002885 Pentatricopeptide_repeat 332 378
IPR002885 Pentatricopeptide_repeat 534 582
IPR002885 Pentatricopeptide_repeat 434 481
IPR002885 Pentatricopeptide_repeat 737 784
IPR032867 DYW_dom 910 1034
IPR002885 Pentatricopeptide_repeat 881 906
IPR002885 Pentatricopeptide_repeat 711 735
IPR002885 Pentatricopeptide_repeat 812 835
No external refs found!