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  5. Gb_30400

Gb_30400


Description : component LSm3 of U6-associated LSm accessory ribonucleoprotein complex


Gene families : OG0008069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00090360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
AT1G21190 No alias Small nuclear ribonucleoprotein family protein 0.04 OrthoFinder output from all 47 species
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Dac_g08156 No alias component *(LSm3) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
GSVIVT01034520001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Lfl_g39666 No alias component *(LSm3) of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 60
No external refs found!