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  5. Gb_30311

Gb_30311


Description : BRX1 assembly factor involved in ITS1 rRNA removal


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30311
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00215770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.09 OrthoFinder output from all 47 species
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.04 OrthoFinder output from all 47 species
Adi_g045878 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
Aop_g02466 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dac_g07263 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01028448001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os02g37870.1 LOC_Os02g37870 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
MA_14692g0010 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.13 OrthoFinder output from all 47 species
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.05 OrthoFinder output from all 47 species
Pp3c16_10600V3.1 Pp3c16_10600 Ribosomal RNA processing Brix domain protein 0.01 OrthoFinder output from all 47 species
Sam_g52557 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Smo66840 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc04g016380.3.1 Solyc04g016380 BRX1 assembly factor involved in ITS1 rRNA removal 0.12 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 67 255
No external refs found!