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  5. Gb_30100

Gb_30100


Description : F-box protein At4g35930 OS=Arabidopsis thaliana (sp|q5xf11|fb248_arath : 136.0)


Gene families : OG0001990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30100

Target Alias Description ECC score Gene Family Method Actions
Adi_g113145 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ala_g28361 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.06 OrthoFinder output from all 47 species
Als_g08740 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.09 OrthoFinder output from all 47 species
Als_g13408 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Aop_g05457 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aop_g11326 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.08 OrthoFinder output from all 47 species
Aspi01Gene38775.t1 Aspi01Gene38775 substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.01G076500.1 Ceric.01G076500 substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ceric.05G056900.1 Ceric.05G056900 substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Ceric.12G033400.1 Ceric.12G033400 substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Dac_g02785 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Dcu_g09432 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
LOC_Os10g30280.1 LOC_Os10g30280 F-box protein At4g35930 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g14639 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Lfl_g20012 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
MA_19354g0010 No alias F-box protein At4g35930 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g07159 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.09 OrthoFinder output from all 47 species
Msp_g42845 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Ppi_g14675 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ppi_g62452 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Sam_g24407 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Smo402840 No alias F-box protein At4g35930 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g033390.3.1 Solyc03g033390 F-box protein At4g35930 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g52237 No alias substrate adaptor *(FBS) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Tin_g08863 No alias substrate adaptor *(FBS) of SCF E3 ubiquiTin ligase... 0.14 OrthoFinder output from all 47 species
Tin_g12923 No alias substrate adaptor *(FBS) of SCF E3 ubiquiTin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!