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  5. Gb_29880

Gb_29880


Description : Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana (sp|q9ss60|pp210_arath : 738.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29880
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
AT2G20540 MEF21 mitochondrial editing factor 21 0.03 OrthoFinder output from all 47 species
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_11545 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_29872 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_33959 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_37802 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.05 OrthoFinder output from all 47 species
Gb_38129 OTP84 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_10426261g0020 CRR22 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_10429958g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_11138g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_140591g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_16226g0010 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.08 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_217g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_27147g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_30632g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_3502g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.04 OrthoFinder output from all 47 species
MA_36643g0010 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_49292g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_59148g0010 CRR22 RNA editing factor (MEF11) 0.04 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_658463g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_681272g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_724726g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
MA_8319g0010 CRR2 Pentatricopeptide repeat-containing protein At3g24000,... 0.06 OrthoFinder output from all 47 species
MA_97789g0010 CRR22 Pentatricopeptide repeat-containing protein At3g26540... 0.07 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002209 No alias not classified & original description: CDS=347-2416 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.02 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e003284_P001 Zm00001e003284 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e008203_P002 Zm00001e008203 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Zm00001e023333_P001 Zm00001e023333 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e023504_P001 CRR22, Zm00001e023504 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e030887_P001 Zm00001e030887 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.03 OrthoFinder output from all 47 species
Zm00001e032242_P001 Zm00001e032242 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Zm00001e035764_P001 Zm00001e035764 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 243 268
IPR002885 Pentatricopeptide_repeat 647 671
IPR032867 DYW_dom 745 869
IPR002885 Pentatricopeptide_repeat 269 316
IPR002885 Pentatricopeptide_repeat 370 417
IPR002885 Pentatricopeptide_repeat 67 114
IPR002885 Pentatricopeptide_repeat 471 518
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 572 619
No external refs found!