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  5. Gb_29874

Gb_29874 (CRR2)


Aliases : CRR2

Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana (sp|q9stf3|pp265_arath : 437.0)


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29874
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
GSVIVT01012620001 No alias Pentatricopeptide repeat-containing protein At1g09220,... 0.04 OrthoFinder output from all 47 species
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.04 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.06 OrthoFinder output from all 47 species
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
LOC_Os02g06880.1 LOC_Os02g06880 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os02g53050.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.03 OrthoFinder output from all 47 species
LOC_Os03g07330.1 LOC_Os03g07330 Pentatricopeptide repeat-containing protein At5g56310... 0.05 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc02g080350.1.1 Solyc02g080350 Pentatricopeptide repeat-containing protein At1g77170,... 0.04 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.05 OrthoFinder output from all 47 species
Solyc11g012570.3.1 Solyc11g012570 Pentatricopeptide repeat-containing protein At3g51320... 0.04 OrthoFinder output from all 47 species
Zm00001e007538_P001 MEF21, Zm00001e007538 RNA editing factor (MEF21) 0.03 OrthoFinder output from all 47 species
Zm00001e033388_P001 OTP84, Zm00001e033388 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 107 130
IPR002885 Pentatricopeptide_repeat 408 432
IPR002885 Pentatricopeptide_repeat 131 178
IPR002885 Pentatricopeptide_repeat 232 279
IPR002885 Pentatricopeptide_repeat 333 380
No external refs found!