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  5. Gb_29552

Gb_29552


Description : regulatory protein (PATROL1) of CSC trafficking


Gene families : OG0000883 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29552

Target Alias Description ECC score Gene Family Method Actions
AT2G25800 No alias Protein of unknown function (DUF810) 0.03 OrthoFinder output from all 47 species
AT5G06970 No alias Protein of unknown function (DUF810) 0.04 OrthoFinder output from all 47 species
Aev_g02574 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Aev_g02581 No alias regulatory protein *(PATROL1) involved in cellulose... 0.02 OrthoFinder output from all 47 species
Ala_g02603 No alias regulatory protein *(PATROL1) involved in cellulose... 0.04 OrthoFinder output from all 47 species
Azfi_s0099.g044165 No alias not classified & original description: CDS=394-3840 0.06 OrthoFinder output from all 47 species
Ceric.13G084700.1 Ceric.13G084700 regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Cre11.g467500 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g03416 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
GSVIVT01019827001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01035623001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01036645001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g47930.1 LOC_Os03g47930 regulatory protein (PATROL1) of CSC trafficking 0.04 OrthoFinder output from all 47 species
LOC_Os09g17760.1 LOC_Os09g17760 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g16187 No alias regulatory protein *(PATROL1) involved in cellulose... 0.02 OrthoFinder output from all 47 species
MA_10431429g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10436391g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_12587g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_165845g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_68516g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_715866g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_9285214g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp4g07000.1 No alias regulatory protein (PATROL1) of CSC trafficking 0.08 OrthoFinder output from all 47 species
Mp4g20090.1 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017550 No alias not classified & original description: CDS=962-3898 0.03 OrthoFinder output from all 47 species
Smo174730 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo92955 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g005630.3.1 Solyc03g005630 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc08g066600.4.1 Solyc08g066600 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e031380_P001 Zm00001e031380 regulatory protein (PATROL1) of CSC trafficking 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!