AMTR_s00056p00059990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.40

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.PWP2/UTP1 assembly factor


Gene families : OG_01_0005597 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005597_tree ,
OG_02_0007728 (LandPlants) Phylogenetic Tree(s): OG_02_0007728_tree ,
OG_03_0009679 (SeedPlants) Phylogenetic Tree(s): OG_03_0009679_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00059990
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.06 Archaeplastida
Cpa|evm.model.tig00000076.89 No alias Periodic tryptophan protein 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre06.g254150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
GSVIVT01017243001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.04 Archaeplastida
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.04 Archaeplastida
MA_917430g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.06 Archaeplastida
Pp3c7_9990V3.1 No alias periodic tryptophan protein 2 0.06 Archaeplastida
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 Archaeplastida
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.06 LandPlants
GSVIVT01017243001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 LandPlants
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.02 LandPlants
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 LandPlants
MA_917430g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.06 LandPlants
Pp3c7_9990V3.1 No alias periodic tryptophan protein 2 0.05 LandPlants
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 LandPlants
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.06 SeedPlants
GSVIVT01017243001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 SeedPlants
Gb_23048 No alias SSU processome assembly factor (UTP1/PWP2) 0.02 SeedPlants
LOC_Os05g44320.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 SeedPlants
MA_917430g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc03g120080.4.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 811 916
IPR001680 WD40_repeat 531 566
IPR001680 WD40_repeat 132 167
IPR001680 WD40_repeat 579 608
IPR001680 WD40_repeat 449 480
IPR001680 WD40_repeat 398 432
No external refs found!