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  5. Gb_29005

Gb_29005 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : protein factor PRPF4 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29005

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662800 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g04836 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
LOC_Os03g23935.1 EMB2776, LIS,... protein factor PRPF4 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
Nbi_g13194 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species
Pir_g09580 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 39 76
IPR001680 WD40_repeat 3 35
IPR001680 WD40_repeat 87 118
IPR001680 WD40_repeat 126 160
No external refs found!