1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_28681

Gb_28681


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 248.0)


Gene families : OG0000004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28681

Target Alias Description ECC score Gene Family Method Actions
Aev_g35667 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g43464 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g26268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10341.t1 ORF111A, Aspi01Gene10341 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10767.t1 CRK8, Aspi01Gene10767 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52277.t1 CRK8, Aspi01Gene52277 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59929.t1 CRK8, Aspi01Gene59929 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66644.t1 ORF240B, Aspi01Gene66644 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.15G026100.1 Ceric.15G026100 not classified & original description: pacid=50640205... 0.01 OrthoFinder output from all 47 species
Dde_g23251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031819001 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_15114 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 OrthoFinder output from all 47 species
Gb_21971 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g22400.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g22445 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g38078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_31360V3.1 Pp3c2_31360 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 OrthoFinder output from all 47 species
Sam_g02941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g41226 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g46923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g011275.1.1 Solyc06g011275 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!