Gb_28672 (RUB1, ATRUB1, NEDD8)


Aliases : RUB1, ATRUB1, NEDD8

Description : ubiquitin-fold protein (RUB)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28672

Target Alias Description ECC score Gene Family Method Actions
AT2G35635 UBQ7, RUB2 ubiquitin 7 0.03 OrthoFinder output from all 47 species
Aev_g25753 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g40141 UBQ10 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g46335 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.31G025200.1 UBQ14, Ceric.31G025200 UBQ ubiquitin-fold protein & original description:... 0.1 OrthoFinder output from all 47 species
Dac_g04523 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g29687 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06640.1 UBQ10, LOC_Os02g06640 ubiquitin-fold protein (UBQ) 0.03 OrthoFinder output from all 47 species
LOC_Os07g30640.1 LOC_Os07g30640 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Lfl_g16683 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g23474 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g23519 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
MA_454078g0010 UBQ11 Polyubiquitin (Fragment) OS=Hordeum vulgare... 0.03 OrthoFinder output from all 47 species
MA_9420337g0010 UBQ11 ubiquitin-fold protein (UBQ) 0.05 OrthoFinder output from all 47 species
Ppi_g21095 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g42667 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g098385.1.1 Solyc09g098385 Ubiquitin-40S ribosomal protein S27a OS=Solanum... 0.06 OrthoFinder output from all 47 species
Spa_g12172 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29049 UBQ14 UBQ ubiquiTin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e034164_P001 RUB1, ATRUB1,... ubiquitin-fold protein (RUB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 79 150
No external refs found!