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  5. Gb_28619

Gb_28619


Description : Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana (sp|q9saa6|ppr34_arath : 456.0)


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28619

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.05 OrthoFinder output from all 47 species
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00105070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01029769001 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.07 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 OrthoFinder output from all 47 species
LOC_Os04g38930.1 LOC_Os04g38930 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
LOC_Os06g36910.1 LOC_Os06g36910 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 OrthoFinder output from all 47 species
MA_299481g0010 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.05 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 OrthoFinder output from all 47 species
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.07 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc03g007390.4.1 Solyc03g007390 Pentatricopeptide repeat-containing protein At5g40400... 0.06 OrthoFinder output from all 47 species
Solyc04g079850.2.1 Solyc04g079850 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc07g047620.3.1 Solyc07g047620 Pentatricopeptide repeat-containing protein At4g26680,... 0.05 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e016768_P001 Zm00001e016768 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
Zm00001e016770_P001 Zm00001e016770 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 388 419
IPR002885 Pentatricopeptide_repeat 283 315
IPR002885 Pentatricopeptide_repeat 216 265
IPR002885 Pentatricopeptide_repeat 496 545
IPR002885 Pentatricopeptide_repeat 566 615
IPR002885 Pentatricopeptide_repeat 426 475
IPR002885 Pentatricopeptide_repeat 146 195
IPR002885 Pentatricopeptide_repeat 322 370
IPR002885 Pentatricopeptide_repeat 116 143
No external refs found!