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  5. Gb_28586

Gb_28586 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 529.0)


Gene families : OG0015202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0015202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28586
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
GSVIVT01032431001 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_03481 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os03g49464.2 LOC_Os03g49464 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
MA_128425g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_28762g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.11 OrthoFinder output from all 47 species
Zm00001e012231_P001 Zm00001e012231 Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 707 731
IPR002885 Pentatricopeptide_repeat 343 369
IPR002885 Pentatricopeptide_repeat 633 681
IPR002885 Pentatricopeptide_repeat 167 214
IPR002885 Pentatricopeptide_repeat 531 580
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 268 316
IPR002885 Pentatricopeptide_repeat 499 528
No external refs found!