Gb_28475


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 176.0)


Gene families : OG0000004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28475

Target Alias Description ECC score Gene Family Method Actions
Adi_g019321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g041283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g129866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21469 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28677 ORF240B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34121 CRK8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g45053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g50255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g59769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29223.t1 Aspi01Gene29223 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31527.t1 Aspi01Gene31527 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39268.t1 Aspi01Gene39268 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40360.t1 Aspi01Gene40360 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42810.t1 Aspi01Gene42810 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52980.t1 Aspi01Gene52980 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76415 CRK8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G062400.1 Ceric.01G062400 not classified & original description: pacid=50591589... 0.02 OrthoFinder output from all 47 species
Ceric.05G030600.1 Ceric.05G030600 not classified & original description: pacid=50578483... 0.02 OrthoFinder output from all 47 species
Ceric.10G040100.1 Ceric.10G040100 not classified & original description: pacid=50612675... 0.02 OrthoFinder output from all 47 species
Ceric.20G026200.1 CRK8, Ceric.20G026200 not classified & original description: pacid=50567177... 0.02 OrthoFinder output from all 47 species
Ceric.35G005900.1 Ceric.35G005900 not classified & original description: pacid=50581034... 0.02 OrthoFinder output from all 47 species
Dcu_g39733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12721 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02582 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.08 OrthoFinder output from all 47 species
Gb_07918 ORF240B Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_30803 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 OrthoFinder output from all 47 species
Gb_40419 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 OrthoFinder output from all 47 species
Len_g24710 CRK8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16735 CRK8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42688 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19574 CRK8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22481 ORF240B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c10_20080V3.1 Pp3c10_20080 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c12_12280V3.1 Pp3c12_12280 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 OrthoFinder output from all 47 species
Pp3c13_14360V3.1 Pp3c13_14360 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c14_6702V3.1 Pp3c14_6702 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c19_10910V3.1 Pp3c19_10910 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 OrthoFinder output from all 47 species
Pp3c20_550V3.1 Pp3c20_550 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 OrthoFinder output from all 47 species
Pp3c23_16480V3.1 Pp3c23_16480 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 OrthoFinder output from all 47 species
Ppi_g62407 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g044205.1.1 Solyc03g044205 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Solyc10g049415.1.1 Solyc10g049415 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Solyc11g061755.1.1 Solyc11g061755 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Solyc11g150135.1.1 Solyc11g150135 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Solyc12g027655.1.1 Solyc12g027655 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Tin_g16067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g32893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!