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  5. Gb_27824

Gb_27824


Description : Pentatricopeptide repeat-containing protein At1g71210, mitochondrial OS=Arabidopsis thaliana (sp|q8gza6|pp113_arath : 507.0)


Gene families : OG0013883 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013883_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27824

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00248730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71210,... 0.03 OrthoFinder output from all 47 species
Gb_27816 No alias Pentatricopeptide repeat-containing protein At1g71210,... 0.06 OrthoFinder output from all 47 species
LOC_Os02g03530.1 LOC_Os02g03530 Pentatricopeptide repeat-containing protein At1g71210,... 0.03 OrthoFinder output from all 47 species
Solyc07g042030.2.1 Solyc07g042030 Pentatricopeptide repeat-containing protein At1g71210,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 681 711
IPR002885 Pentatricopeptide_repeat 436 465
IPR002885 Pentatricopeptide_repeat 373 418
IPR002885 Pentatricopeptide_repeat 545 592
IPR002885 Pentatricopeptide_repeat 823 871
IPR002885 Pentatricopeptide_repeat 613 661
IPR002885 Pentatricopeptide_repeat 754 800
IPR002885 Pentatricopeptide_repeat 338 361
IPR002885 Pentatricopeptide_repeat 306 331
IPR002885 Pentatricopeptide_repeat 200 227
IPR002885 Pentatricopeptide_repeat 270 296
IPR002885 Pentatricopeptide_repeat 725 749
No external refs found!