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  5. Gb_27710

Gb_27710


Description : class V/Su(var) histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0002813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002813_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27710

Target Alias Description ECC score Gene Family Method Actions
AT2G23740 No alias nucleic acid binding;sequence-specific DNA binding... 0.03 OrthoFinder output from all 47 species
Adi_g018566 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Adi_g102347 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024933 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036615 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.01G055800.1 Ceric.01G055800 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dcu_g04992 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
GSVIVT01019046001 No alias Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
LOC_Os02g47890.1 LOC_Os02g47890 Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g47900.1 LOC_Os02g47900 class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Lfl_g03507 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Mp7g11940.1 No alias class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Ore_g28925 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ppi_g17471 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020752 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Smo123777 No alias Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e023341_P001 Zm00001e023341 class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone lysine N-methyltransferase activity IEA Interproscan
BP GO:0034968 histone lysine methylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 1278 1412
IPR040689 SUVR5_Znf-C2H2_3rpt 884 966
IPR040689 SUVR5_Znf-C2H2_3rpt 1010 1046
IPR001214 SET_dom 1431 1550
No external refs found!