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  5. Gb_27431

Gb_27431 (PKDM7D)


Aliases : PKDM7D

Description : histone demethylase (PKDM7). transcription factor (JUMONJI)


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27431

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.04 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g042525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15008 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17236 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434186g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Mp6g20340.1 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58500 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g009990.3.1 PKDM7D, Solyc04g009990 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Tin_g12700 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013363_P002 Zm00001e013363 histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 573 623
IPR003347 JmjC_dom 350 466
IPR003349 JmjN 103 136
IPR003888 FYrich_N 1095 1141
IPR003889 FYrich_C 1148 1234
No external refs found!